Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs7585081 | chr2:32976000 | G/A | 8.22E-13 | 113 | 48 | 26.57 | 0.9 | KM Plot |
THYM | rs7598419 | chr2:73798223 | A/G | 6.97E-5 | 110 | 37.63 | 46.27 | 32.7 | KM Plot |
THYM | rs7606648 | chr2:32981379 | C/T | 1.06E-12 | 112 | 49.5 | 26.2 | 0.9 | KM Plot |
THYM | rs76240893 | chr8:82759820 | C/A | 4.45E-5 | 113 | 42.82 | 35.77 | 22.5 | KM Plot |
THYM | rs77032964 | chr9:96989798 | T/C | 0 | 111 | 38.58 | 61.78 | 0.13 | KM Plot |
THYM | rs77057724 | chr8:82713223 | G/A | 4.45E-5 | 113 | 42.82 | 35.77 | 22.5 | KM Plot |
THYM | rs77061098 | chr8:82689463 | A/G | 7.38E-5 | 112 | 41.77 | 41.33 | 22.5 | KM Plot |
THYM | rs774464 | chr8:82733663 | G/A | 4.45E-5 | 113 | 42.82 | 35.77 | 22.5 | KM Plot |
THYM | rs774471 | chr8:82724429 | A/G | 4.45E-5 | 113 | 42.82 | 35.77 | 22.5 | KM Plot |
THYM | rs774474 | chr8:82726140 | C/T | 4.45E-5 | 113 | 42.82 | 35.77 | 22.5 | KM Plot |
THYM | rs77685025 | chr11:126230844 | G/A | 0 | 108 | 38.13 | 49.75 | 0.13 | KM Plot |
THYM | rs7807719 | chr7:76134433 | C/A | 2.57E-5 | 112 | 38.33 | 46.23 | 25.83 | KM Plot |
THYM | rs79050799 | chr22:45722753 | GGTGT/G | 6.34E-5 | 111 | 41.77 | 37.8 | 38.58 | KM Plot |
THYM | rs7931489 | chr11:125839418 | A/T | 2.98E-6 | 111 | 42.82 | 36.67 | 1.93 | KM Plot |
THYM | rs7953584 | chr12:58098189 | G/A | 0 | 112 | 40.67 | 41.7 | 0.13 | KM Plot |